Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA361365

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2000 whole-genome sequencing of Escherichia coli with 2.82 million short reads and 184× mean coverage of 848 Mb at moderate quality (92.4% Q20, 91% Q30). High coverage enables confident variant calling; moderate Q-scores may require polish for de novo assembly.

Data type / assay
WGS
Organism
Escherichia coli
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
6 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 848429740 reported
total reads 2820137 reported
mean coverage 184.4 extrapolated
n content pct 0 measured
pct q20 bases 92.4 measured
pct q30 bases 91 measured
gc content pct 50.4 measured
mean read length 151 measured
mean base quality 35.6 measured
adapter content pct 27.21 measured
duplication rate pct 0.22 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 184.4 extrapolated ×1.2 100%
pct q30 bases 91 measured ×1 100%
duplication rate pct 0.22 measured ×0.5 100%
adapter content pct 27.21 measured ×0.4 0%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0