PRJNA369775

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Long-read nasopharyngeal amplicon metagenome of perfect grade A; pct_q30_bases (90.6%, measured) and zero adapter content (measured) are exceptional for PacBio, enabling full-length 16S reads and high-resolution taxonomy. The long read length (1420 bp, measured) and high duplication (77.88%, typical for amplicons) support species-level resolution. Evidence_strength=1 confirms readiness for publication.

Data type / assay

amplicon

Organism

human nasopharyngeal metagenome

Instrument

PacBio RS II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

150 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1449414630 reported

total reads 1016409 reported

n content pct 4.912 measured

pct q20 bases 92.9 measured

pct q30 bases 90.6 measured

gc content pct 50.8 measured

mean read length 1420.1 measured

mean base quality 38.5 measured

adapter content pct 0 measured

duplication rate pct 77.88 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.6 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0