Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA37041

BioProject first seen 2012

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

454 GS FLX whole-genome sequencing of Streptomyces viridosporus ATCC 14672 (antibiotic producer) with 20.5 million reads and 1.19 Gb at moderate quality (91.9% Q20, 25.6% Q30). 454 long reads benefit GC-rich actinomycete assembly; lower Q30 requires polishing for variant applications.

Data type / assay
WGS
Organism
Streptomyces viridosporus ATCC 14672
Instrument
454 GS FLX
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
11 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1190433482 reported
total reads 20525448 reported
n content pct 0.004 measured
pct q20 bases 91.9 measured
pct q30 bases 25.6 measured
gc content pct 63.9 measured
mean read length 237 measured
mean base quality 27.2 measured
adapter content pct 0 measured
duplication rate pct 5.24 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 25.6 measured ×1 0%
duplication rate pct 5.24 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0