PRJNA370526

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2000 hybrid WGS of Flavobacterium sp. KBS0721 combining short and long reads (1.47 billion total, 1.49 Gb) at high quality (96.3% Q20, 90.6% Q30). Hybrid approach improves repeat assembly and scaffolding compared to short-read-only sequencing in this environmental bacterium.

Data type / assay

WGS

Organism

Flavobacterium sp. KBS0721

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

hybrid (short+long)

Files available

FASTQ (raw reads)

N numbers (samples, groups)

2 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1490233536 reported

total reads 1469204 reported

n content pct 0 measured

pct q20 bases 96.3 measured

pct q30 bases 90.6 measured

gc content pct 33.8 measured

mean read length 300 measured

mean base quality 35.6 measured

adapter content pct 8.41 measured

duplication rate pct 1.86 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.6 measured ×1 100%

duplication rate pct 1.86 measured ×0.5 100%

adapter content pct 8.41 measured ×0.4 47%

QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0