PRJNA371303

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Amplicon of human (HiSeq 2500, 151bp). Excellent measured QC: 95.6% Q30 and mean quality 36.9 drive the grade. Target coverage (929.6x) is extrapolated; measured base quality is definitive (evidence_strength=1). Suitable for confident variant detection.

Data type / assay

amplicon

Organism

Homo sapiens

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

8 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 57635843556 reported

total reads 282284292 reported

n content pct 0 measured

pct q20 bases 96.5 measured

pct q30 bases 95.6 measured

gc content pct 55.2 measured

mean read length 151 measured

mean base quality 36.9 measured

adapter content pct 0.54 measured

duplication rate pct 48.26 measured

mean target coverage 929.6 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.6 measured ×1 100%

adapter content pct 0.54 measured ×0.5 100%

QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0