Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA372840

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bulk RNA-seq dataset from Gyromitra esculenta (false morel fungus) on an Illumina HiSeq 2500 contains 67 million reads with 94.6% Q30 bases, providing comprehensive transcriptome coverage for mycological research. Researchers studying fruiting body development, toxin biosynthesis, or fungal genetics in edible and medicinal fungi will benefit from high-quality gene expression data. The dataset enables assembly of novel transcripts and differential expression analysis across biological conditions.

Data type / assay
bulk-RNA-seq
Organism
Gyromitra esculenta
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 20251433252 reported
total reads 67057726 reported
n content pct 0.002 measured
pct q20 bases 97.2 measured
pct q30 bases 94.6 measured
gc content pct 48.8 measured
mean read length 151 measured
mean base quality 36.4 measured
adapter content pct 15.93 measured
duplication rate pct 35.62 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.6 measured ×1 100%
mean base quality 36.4 measured ×0.6 100%
adapter content pct 15.93 measured ×0.4 23%
duplication rate pct 35.62 measured ×0.4 88%
QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0