Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA372858

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bulk RNA-seq dataset from the fungus Morchella importuna on an Illumina HiSeq 2500 generated 57 million reads with exceptional quality (95.9% Q30), suitable for gene expression and transcriptome assembly studies. Researchers examining fruiting body development, metabolic adaptation, or secondary metabolite biosynthesis in mushrooms will find high-confidence transcript quantification data. The 48.8% GC content is typical for eukaryotic transcriptomes and supports reliable read mapping.

Data type / assay
bulk-RNA-seq
Organism
Morchella importuna
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 17107354438 reported
total reads 56646869 reported
n content pct 0.005 measured
pct q20 bases 97.8 measured
pct q30 bases 95.9 measured
gc content pct 48.8 measured
mean read length 151 measured
mean base quality 36.7 measured
adapter content pct 13.85 measured
duplication rate pct 39.23 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.9 measured ×1 100%
mean base quality 36.7 measured ×0.6 100%
adapter content pct 13.85 measured ×0.4 34%
duplication rate pct 39.23 measured ×0.4 80%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0