Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA373879

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

81/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human metagenome whole-genome sequencing via HiSeq 2500 produces ~71 billion bases (287 million reads) with moderate quality (82.8% Q30 bases), capturing microbial community and host genetic variation simultaneously. The dataset enables simultaneous investigation of gut or other microbiota composition and host genomic background, though moderate quality requires careful assembly and variant-calling parameters to minimize spurious calls.

Data type / assay
WGS
Organism
human metagenome
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
20 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 71859569000 reported
total reads 287438276 reported
n content pct 0.008 measured
pct q20 bases 90.4 measured
pct q30 bases 82.8 measured
gc content pct 45.6 measured
mean read length 125 measured
mean base quality 34.1 measured
adapter content pct 0.15 measured
duplication rate pct 0.22 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 81/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.8 measured ×1 64%
duplication rate pct 0.22 measured ×0.5 100%
adapter content pct 0.15 measured ×0.4 100%
QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0