Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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PRJNA373912

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

42/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Hybrid short- and long-read genome sequencing of Micrococcus sp. KBS0714 via GridION produces 2.85 billion bases (8.8 million reads) with very low Q30 bases (0.2%), as expected for Oxford Nanopore long-read technology. This hybrid dataset enables scaffolding of short-read assemblies and resolution of repetitive genomic regions inaccessible to short-read-only approaches, despite lower read accuracy.

Data type / assay
WGS
Organism
Micrococcus sp. KBS0714
Instrument
GridION
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2851668650 reported
total reads 8868701 reported
n content pct 0 measured
pct q20 bases 29 measured
pct q30 bases 0.2 measured
gc content pct 70.5 measured
mean read length 8868.4 measured
mean base quality 14.9 measured
adapter content pct 0 measured
duplication rate pct 14.17 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 42/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0.2 measured ×1 0%
duplication rate pct 14.17 measured ×0.5 81%
adapter content pct 0 measured ×0.4 100%
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0