PRJNA375726

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

64/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

NextSeq 500 amplicon sequencing of Homo sapiens with 46.7 million short reads and 7.05 Gb at good quality (95.5% Q20, 89.2% Q30, 57.5% GC). Supports targeted variant detection in clinical or population research applications.

Data type / assay

amplicon

Organism

Homo sapiens

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

23 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7048907406 reported

total reads 46681506 reported

n content pct 0.002 measured

pct q20 bases 95.5 measured

pct q30 bases 89.2 measured

gc content pct 57.5 measured

mean read length 151 measured

mean base quality 33.8 measured

adapter content pct 94.49 measured

duplication rate pct 86.71 measured

mean target coverage 113.7 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 64/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.2 measured ×1 96%

adapter content pct 94.49 measured ×0.5 0%

QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0