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Provenance — who produced it, who reused it
Linked to 3 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
3 further papers cite this accession but reuse could not be confirmed.
Deep data QC
61/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Actinomyces viscosus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
467 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
394635102188
reported
total reads
1383593661
reported
n content pct
0
measured
pct q20 bases
97.5
measured
pct q30 bases
94.8
measured
gc content pct
39
measured
mean read length
151
measured
mean base quality
34.8
measured
adapter content pct
59.77
measured
duplication rate pct
29.48
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 61/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
94.8
measured
×1
100%
duplication rate pct
29.48
measured
×0.5
33%
adapter content pct
59.77
measured
×0.4
0%
QC cost
22 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0