Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA378299

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

10/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Soil metagenome amplicon from an Illumina MiSeq with 4.4 million short reads at 72% Q30. The moderate quality and depth capture major soil bacterial and archaeal community members.

Data type / assay
amplicon
Organism
soil metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
57 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2463549702 reported
total reads 4371201 reported
n content pct 0 measured
pct q20 bases 80.2 measured
pct q30 bases 72.4 measured
gc content pct 50.5 measured
mean read length 251 measured
mean base quality 31.4 measured
adapter content pct 14.01 measured
duplication rate pct 93.86 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 10/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 72.4 measured ×1 12%
adapter content pct 14.01 measured ×0.5 7%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0