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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
82/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Leucaena cruziana
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
16 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
146505297165
reported
total reads
638802031
reported
n content pct
0
measured
pct q20 bases
97
measured
pct q30 bases
91.5
measured
gc content pct
44.6
measured
mean read length
151
measured
mean base quality
34.1
measured
adapter content pct
16.46
measured
duplication rate pct
41.11
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 82/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
91.5
measured
×1
100%
mean base quality
34.1
measured
×0.6
100%
adapter content pct
16.46
measured
×0.4
20%
duplication rate pct
41.11
measured
×0.4
75%
QC cost
31 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0