Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA381066

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human amplicon sequencing on HiSeq 3000 yields 15 billion bases (121 million reads) with high quality (93.7% Q30 bases), providing deep targeted coverage of specific genomic loci. The excellent quality and high read depth support confident variant calling, allele frequency estimation, and analysis of sequence variation in targeted human genomic regions.

Data type / assay
amplicon
Organism
Homo sapiens
Instrument
Illumina HiSeq 3000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 15359572368 reported
total reads 121901368 reported
n content pct 0.004 measured
pct q20 bases 97 measured
pct q30 bases 93.7 measured
gc content pct 63.7 measured
mean read length 126 measured
mean base quality 35.4 measured
adapter content pct 0.06 measured
duplication rate pct 99.37 measured
mean target coverage 247.7 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.7 measured ×1 100%
adapter content pct 0.06 measured ×0.5 100%
QC cost 52 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0