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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ChIP-seq
Organism
Arabidopsis thaliana
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
76 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
295816142457
reported
total reads
1790833398
reported
n content pct
0.012
measured
pct q20 bases
85.7
measured
pct q30 bases
81.3
measured
gc content pct
37.4
measured
mean read length
75.4
measured
mean base quality
31.6
measured
adapter content pct
0.01
measured
duplication rate pct
10.3
measured
How this grade was computed
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ChIP-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
81.3
measured
×1
56%
QC cost
51 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0