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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
70/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
marine metagenome
Instrument
NextSeq 550
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
480 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
3867952566000
reported
total reads
12893175220
reported
n content pct
0.082
measured
pct q20 bases
90.3
measured
pct q30 bases
86.5
measured
gc content pct
44.5
measured
mean read length
150
measured
mean base quality
33
measured
adapter content pct
29.39
measured
duplication rate pct
1
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 70/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
86.5
measured
×1
83%
duplication rate pct
1
measured
×0.5
100%
adapter content pct
29.39
measured
×0.4
0%
QC cost
17 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0