PRJNA38773

BioProject first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

59/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

454 GS FLX whole-genome sequencing of Bacteroides sp. 3_1_40A with 362k reads and 170 Mb at moderate quality (91.3% Q20, 76.5% Q30). 454 long reads aid repeat-rich genome assembly; low coverage suggests incomplete sequencing.

Data type / assay

WGS

Organism

Bacteroides sp. 3_1_40A

Instrument

454 GS FLX

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

8 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 170036030 reported

total reads 362118 reported

n content pct 0.021 measured

pct q20 bases 91.3 measured

pct q30 bases 76.5 measured

gc content pct 40.5 measured

mean read length 261.7 measured

mean base quality 34 measured

adapter content pct 0 measured

duplication rate pct 14.75 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 59/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 76.5 measured ×1 33%

duplication rate pct 14.75 measured ×0.5 79%

adapter content pct 0 measured ×0.4 100%

QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0