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Provenance — who produced it, who reused it
Linked to 8 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
8 further papers cite this accession but reuse could not be confirmed.
Deep data QC
57/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
gut metagenome
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
181 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
131607994399
reported
total reads
530450476
reported
n content pct
0.028
measured
pct q20 bases
93.1
measured
pct q30 bases
86.5
measured
gc content pct
46.5
measured
mean read length
123.9
measured
mean base quality
34.9
measured
adapter content pct
21.45
measured
duplication rate pct
24.04
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 57/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
86.5
measured
×1
83%
duplication rate pct
24.04
measured
×0.5
50%
adapter content pct
21.45
measured
×0.4
0%
QC cost
1 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0