PRJNA395139

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Arabidopsis thaliana miRNA-seq from an Illumina HiSeq 1500 with 469 million short reads at 98% Q30, generating 10.7 billion bases. The exceptional quality enables precise microRNA quantification across developmental stages.

Data type / assay

bulk-RNA-seq

Organism

Arabidopsis thaliana

Instrument

Illumina HiSeq 1500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

7 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 10668116292 reported

total reads 469257001 reported

n content pct 0.011 measured

pct q20 bases 99.3 measured

pct q30 bases 98.1 measured

gc content pct 43 measured

mean read length 21.6 measured

mean base quality 36.6 measured

adapter content pct 0 measured

duplication rate pct 87.32 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.1 measured ×1 100%

mean base quality 36.6 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 87.32 measured ×0.4 0%

QC cost 45 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0