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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
85/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Oryza sativa
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
11 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
305587091250
reported
total reads
1640272646
reported
mean coverage
710.7
extrapolated
n content pct
0
measured
pct q20 bases
87.7
measured
pct q30 bases
80.6
measured
gc content pct
40.6
measured
mean read length
149.7
measured
mean base quality
31.9
measured
adapter content pct
0
measured
duplication rate pct
2.34
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 85/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
710.7
extrapolated
×1.2
100%
pct q30 bases
80.6
measured
×1
53%
duplication rate pct
2.34
measured
×0.5
100%
adapter content pct
0
measured
×0.4
100%
QC cost
31 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0