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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
41/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Oryza coarctata
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
6 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
217826232331
reported
total reads
705165743
reported
n content pct
0.035
measured
pct q20 bases
88.4
measured
pct q30 bases
75.9
measured
gc content pct
45
measured
mean read length
151
measured
mean base quality
34
measured
adapter content pct
53.6
measured
duplication rate pct
8.87
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 41/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
75.9
measured
×1
30%
duplication rate pct
8.87
measured
×0.5
97%
adapter content pct
53.6
measured
×0.4
0%
QC cost
23 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0