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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
19/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Lacticaseibacillus paracasei ATCC 334
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
10 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
31812868920
reported
total reads
190488995
reported
n content pct
0.004
measured
pct q20 bases
67.6
measured
pct q30 bases
66.6
measured
gc content pct
44.2
measured
mean read length
156
measured
mean base quality
27.3
measured
adapter content pct
0
measured
duplication rate pct
69.63
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 19/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
66.6
measured
×1
0%
mean base quality
27.3
measured
×0.6
0%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
69.63
measured
×0.4
12%
QC cost
26 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0