PRJNA407112

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

MiSeq shotgun metagenomics of insect metagenome with 42 million short reads and 6.13 Gb at high quality (97.4% Q20, 93.5% Q30). Enables profiling of bacterial and fungal symbiont communities for insect-microbe interaction research.

Data type / assay

WGS

Organism

insect metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

37 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6133286933 reported

total reads 42052499 reported

n content pct 0.003 measured

pct q20 bases 97.4 measured

pct q30 bases 93.5 measured

gc content pct 50.2 measured

mean read length 147.4 measured

mean base quality 36.1 measured

adapter content pct 0.1 measured

duplication rate pct 68.71 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.5 measured ×1 100%

duplication rate pct 68.71 measured ×0.5 0%

adapter content pct 0.1 measured ×0.4 100%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0