PRJNA407943

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing (Streptococcus agalactiae, MiSeq) with perfect A-grade score (100/100). High base quality (Q30 92.8%, mean 36.4), very low duplication (3.46%), long reads (251bp), and minimal adapter content (0.65%) enable closed-genome assembly and confident variant calling. Highly reusable.

Data type / assay

WGS

Organism

Streptococcus agalactiae

Instrument

Illumina MiSeq

Platform

ILLUMINA

N numbers (samples, groups)

35 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5879407936 reported

total reads 11711968 reported

n content pct 0 measured

pct q20 bases 94.8 measured

pct q30 bases 92.8 measured

gc content pct 35.6 measured

mean read length 251 measured

mean base quality 36.4 measured

adapter content pct 0.65 measured

duplication rate pct 3.46 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.8 measured ×1 100%

duplication rate pct 3.46 measured ×0.5 100%

adapter content pct 0.65 measured ×0.4 100%

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0