Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

PRJNA413666

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Invertebrate metagenome amplicon from an Illumina MiSeq with 8.2 million short reads at 68% Q30. The moderate read count and lower quality may challenge species-level taxonomic resolution.

Data type / assay
amplicon
Organism
invertebrate metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
48 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4097710540 reported
total reads 8162770 reported
n content pct 0 measured
pct q20 bases 79.6 measured
pct q30 bases 68.4 measured
gc content pct 55.1 measured
mean read length 251 measured
mean base quality 29.4 measured
adapter content pct 0 measured
duplication rate pct 98.42 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 68.4 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0