Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA413824

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Oral metagenome whole-genome sequencing on MiSeq generates 12 billion bases (20.6 million reads) with moderate quality (68.3% Q30 bases) and elevated N content (0.056%), indicating some sequencing uncertainty. The dataset captures oral microbial community structure and host oral tissue, though the lower quality and modest coverage limit assembly of individual genomes or detection of rare variants in low-frequency organisms.

Data type / assay
WGS
Organism
oral metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
13 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 12055739585 reported
total reads 20623982 reported
n content pct 0.056 measured
pct q20 bases 81.7 measured
pct q30 bases 68.3 measured
gc content pct 54.2 measured
mean read length 262.5 measured
mean base quality 30.4 measured
adapter content pct 0.71 measured
duplication rate pct 1.3 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 68.3 measured ×1 0%
duplication rate pct 1.3 measured ×0.5 100%
adapter content pct 0.71 measured ×0.4 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0