Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA416839

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

75/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This WGS dataset of Zea mays subsp. mays (maize) on an Illumina HiSeq 2500 generated 161 million reads with 80.4% Q30 bases, supporting crop genome analysis and breeding applications. Researchers investigating genomic selection, hybrid genetics, or agronomic trait mapping will find genome-level sequence data for variant discovery and marker development. The 45.3% GC content is typical for plant genomes.

Data type / assay
WGS
Organism
Zea mays subsp. mays
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 80503253000 reported
total reads 161006506 reported
n content pct 0.002 measured
pct q20 bases 85.8 measured
pct q30 bases 80.4 measured
gc content pct 45.3 measured
mean read length 250 measured
mean base quality 32.9 measured
adapter content pct 0.03 measured
duplication rate pct 1.17 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 75/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 80.4 measured ×1 52%
duplication rate pct 1.17 measured ×0.5 100%
adapter content pct 0.03 measured ×0.4 100%
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0