Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA417691

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This feces metagenome amplicon dataset on an Ion Torrent PGM platform generated 7.1 million reads with 62.4% Q30 bases, capturing gut microbiota via Ion Torrent sequencing chemistry. Researchers comparing Ion Torrent against Illumina amplicon performance or examining legacy Ion Torrent microbiome datasets will find platform-specific read characteristics useful for methodology benchmarking. The quality profile reflects Ion Torrent's known performance with longer homopolymer-prone reads.

Data type / assay
amplicon
Organism
feces metagenome
Instrument
Ion Torrent PGM
Platform
ION_TORRENT
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
67 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1277818094 reported
total reads 7126525 reported
n content pct 0 measured
pct q20 bases 95 measured
pct q30 bases 62.4 measured
gc content pct 53.5 measured
mean read length 175.4 measured
mean base quality 30.5 measured
adapter content pct 0 measured
duplication rate pct 96.33 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 62.4 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0