Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA418574

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This mouse gut metagenome amplicon dataset on a 454 GS FLX Titanium platform generated 1.7 million reads with 63.4% Q30 bases, providing legacy 454 amplicon data for rodent microbiota research. Researchers benchmarking modern sequencing platforms against historic 454 data or validating microbiota analysis methods with older datasets will find this useful. The quality profile reflects 454 platform-specific read characteristics and performance patterns.

Data type / assay
amplicon
Organism
mouse gut metagenome
Instrument
454 GS FLX Titanium
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 639869672 reported
total reads 1749066 reported
n content pct 0.112 measured
pct q20 bases 86.1 measured
pct q30 bases 63.4 measured
gc content pct 53.9 measured
mean read length 401 measured
mean base quality 31 measured
adapter content pct 0 measured
duplication rate pct 94.91 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 63.4 measured ×1 0%
adapter content pct 0 measured ×0.5 100%
QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0