Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA418634

BioProject first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

59/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This amplicon metagenome survey generated on Illumina MiSeq delivers ~4.5 billion bases with good quality (82.7% Q30 bases), optimized for targeted PCR-amplified profiling of microbial or other communities. The amplicon approach enables deep taxonomic coverage of selected marker genes (e.g., 16S rRNA) with a modest run size, though bias toward the amplified targets limits assessment of non-targeted diversity.

Data type / assay
amplicon
Organism
metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4521217800 reported
total reads 7535363 reported
n content pct 0.051 measured
pct q20 bases 92.3 measured
pct q30 bases 82.7 measured
gc content pct 61.1 measured
mean read length 300 measured
mean base quality 34 measured
adapter content pct 8.17 measured
duplication rate pct 80.02 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 59/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.7 measured ×1 64%
adapter content pct 8.17 measured ×0.5 49%
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0