Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA419026

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This WGS dataset of Eutrema heterophyllum on an Illumina HiSeq X Ten platform generated 937 million reads with 83.7% Q30 bases, providing substantial genome coverage for plant genomics research. Researchers investigating genome structure, polyploidy, or environmental adaptation in this plant species will have sufficient sequencing depth for variant discovery and structural analysis. The dataset supports high-quality genome assembly for non-model plant species.

Data type / assay
WGS
Organism
Eutrema heterophyllum
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
20 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 260455049444 reported
total reads 937337499 reported
n content pct 0.002 measured
pct q20 bases 90.1 measured
pct q30 bases 83.7 measured
gc content pct 41.6 measured
mean read length 126 measured
mean base quality 33.1 measured
adapter content pct 0.1 measured
duplication rate pct 4.5 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.7 measured ×1 69%
duplication rate pct 4.5 measured ×0.5 100%
adapter content pct 0.1 measured ×0.4 100%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0