Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA419361

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bulk RNA-seq dataset of Homo sapiens on a NextSeq 500 platform generated 857 million reads with exceptional quality (97.5% Q30), ranking among the highest-fidelity human transcriptome datasets available. Researchers requiring gold-standard human gene expression data for therapeutic validation, disease mechanism studies, or transcriptome reference mapping will benefit from this dataset's scale and accuracy. The data enables detection of even low-abundance transcripts and complex isoform structures.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
41 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 64288361400 reported
total reads 857178152 reported
n content pct 0.003 measured
pct q20 bases 98.2 measured
pct q30 bases 97.5 measured
gc content pct 48 measured
mean read length 75 measured
mean base quality 35.1 measured
adapter content pct 12.57 measured
duplication rate pct 40.1 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.5 measured ×1 100%
mean base quality 35.1 measured ×0.6 100%
adapter content pct 12.57 measured ×0.4 41%
duplication rate pct 40.1 measured ×0.4 78%
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0