PRJNA421733

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Hybrid short+long read whole-genome sequencing from Enterobacter cloacae on MiSeq with ~16.6 million reads and good quality (92.5% Q20, 83.9% Q30), providing adequate hybrid coverage for bacterial genome assembly.

Data type / assay

WGS

Organism

Enterobacter cloacae

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

hybrid (short+long)

Files available

FASTQ (raw reads)

N numbers (samples, groups)

28 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 8293339506 reported

total reads 16658046 reported

n content pct 0.532 measured

pct q20 bases 92.5 measured

pct q30 bases 83.9 measured

gc content pct 55.2 measured

mean read length 206.5 measured

mean base quality 34 measured

adapter content pct 0 measured

duplication rate pct 10.39 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.9 measured ×1 70%

duplication rate pct 10.39 measured ×0.5 93%

adapter content pct 0 measured ×0.4 100%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0