PRJNA422100

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

49/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2500 whole-genome sequencing of Saccharomyces cerevisiae with 298 million short reads and 6,212× mean coverage of 74.5 Gb at moderate quality (72.9% Q20, 68.7% Q30). Extreme depth far exceeds model organism requirements; suitable for rare variant detection or consensus-calling benchmarking.

Data type / assay

WGS

Organism

Saccharomyces cerevisiae

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

92 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 74547710000 reported

total reads 298190840 reported

mean coverage 6212.3 extrapolated

n content pct 0.035 measured

pct q20 bases 72.9 measured

pct q30 bases 68.7 measured

gc content pct 41.1 measured

mean read length 250 measured

mean base quality 28.4 measured

adapter content pct 27.59 measured

duplication rate pct 19.47 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 49/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 6212.3 extrapolated ×1.2 100%

pct q30 bases 68.7 measured ×1 0%

duplication rate pct 19.47 measured ×0.5 64%

adapter content pct 27.59 measured ×0.4 0%

QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0