Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

PRJNA422575

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This whole-exome sequencing (WES) dataset of Homo sapiens on an Illumina HiSeq 2500 generated 2.8 billion reads with 91.6% Q30 bases, providing high-coverage targeted genomic data for clinical and research applications. Researchers performing disease-gene discovery, variant interpretation, or human population genetics will find exome-level coverage sufficient for rare-variant detection and functional annotation. The elevated 55.9% GC content reflects targeted enrichment of coding regions.

Data type / assay
WES
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
18 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 429860786936 reported
total reads 2828031493 reported
n content pct 0.019 measured
pct q20 bases 95.6 measured
pct q30 bases 91.6 measured
gc content pct 55.9 measured
mean read length 76 measured
mean base quality 35.9 measured
adapter content pct 0.09 measured
duplication rate pct 52.93 measured
mean target coverage 6933.2 extrapolated
How this grade was computed
Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WES thresholds, weighted by its importance; nothing is hidden or subjective.

mean target coverage 6933.2 extrapolated ×1.2 100%
pct q30 bases 91.6 measured ×1 100%
duplication rate pct 52.93 measured ×0.5 0%
adapter content pct 0.09 measured ×0.4 100%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0