Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA422602

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

67/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Amplicon sequencing of Pyrococcus furiosus on MiSeq yields 4.8 billion bases (23.5 million reads) with high quality (91.7% Q30 bases), optimized for marker-gene profiling of this hyperthermophilic archaeon. The good quality supports confident identification and quantification of target loci, though the modest dataset size suits single-organism or limited-sample investigations.

Data type / assay
amplicon
Organism
Pyrococcus furiosus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
84 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4808999850 reported
total reads 23543050 reported
n content pct 0 measured
pct q20 bases 93.4 measured
pct q30 bases 91.7 measured
gc content pct 40 measured
mean read length 200 measured
mean base quality 36.3 measured
adapter content pct 95.29 measured
duplication rate pct 98.76 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 67/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.7 measured ×1 100%
adapter content pct 95.29 measured ×0.5 0%
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0