Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA422809

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Plasmodium falciparum NF54 whole-genome sequencing on NextSeq 500 produces 16.2 billion bases (56.2 million reads) with good quality (85.5% Q30 bases), targeting the canonical malaria parasite reference strain. The dataset supports variant discovery, antibiotic-resistance profiling, and population comparisons; the reference status and good depth enable high-confidence SNP and structural-variant detection.

Data type / assay
WGS
Organism
Plasmodium falciparum NF54
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 16231789231 reported
total reads 56230813 reported
n content pct 0.156 measured
pct q20 bases 89.9 measured
pct q30 bases 85.5 measured
gc content pct 20.8 measured
mean read length 143.6 measured
mean base quality 32.7 measured
adapter content pct 0.07 measured
duplication rate pct 2.16 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.5 measured ×1 78%
duplication rate pct 2.16 measured ×0.5 100%
adapter content pct 0.07 measured ×0.4 100%
QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0