PRJNA431934

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Whole-genome sequencing from bison with 71.6 billion reads. Grade A (98/100) is driven by exceptionally low duplication at 9.94% (scored 94/100) and strong Q30 bases at 93.2%, both critical for variant calling. The low duplication rate is ideal for de novo assembly and germline variant discovery; production-quality data.

Data type / assay

WGS

Organism

Bison bison

Instrument

Illumina Genome Analyzer IIx

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

391 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 17974508432749 reported

total reads 71623169603 reported

n content pct 0.004 measured

pct q20 bases 97.5 measured

pct q30 bases 93.2 measured

gc content pct 43.6 measured

mean read length 151 measured

mean base quality 35.8 measured

adapter content pct 0.36 measured

duplication rate pct 9.94 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.2 measured ×1 100%

duplication rate pct 9.94 measured ×0.5 94%

adapter content pct 0.36 measured ×0.4 100%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0