Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA433082

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This amplicon dataset from Rattus norvegicus on an HiSeq X Ten platform generated 45 million reads with 95.1% Q30 bases, enabling high-confidence microbiota or genomic variant studies in a model organism. Researchers using rats for disease models, pharmacogenomics, or microbiota-phenotype association studies will find reliable amplicon sequence data. The high quality supports stringent variant calling and accurate taxonomic assignment in model organism research.

Data type / assay
amplicon
Organism
Rattus norvegicus
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 13636948200 reported
total reads 45456494 reported
n content pct 0.001 measured
pct q20 bases 98.3 measured
pct q30 bases 95.1 measured
gc content pct 49.7 measured
mean read length 150 measured
mean base quality 39.1 measured
adapter content pct 0.15 measured
duplication rate pct 98.54 measured
mean target coverage 247.9 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.1 measured ×1 100%
adapter content pct 0.15 measured ×0.5 100%
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0