Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA434249

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

41/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human gut metagenome amplicon-seq on MiSeq spans 7.4 billion bases (12.3 million reads) with moderate quality (82.4% Q30 bases), providing reasonable depth for microbiota profiling. The dataset captures amplicon variation across samples; moderate quality suits typical 16S/18S abundance surveys where minor sequencing errors do not significantly affect taxonomic assignment.

Data type / assay
amplicon
Organism
human gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
235 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7402140830 reported
total reads 12295915 reported
n content pct 0.008 measured
pct q20 bases 90.8 measured
pct q30 bases 82.4 measured
gc content pct 52.4 measured
mean read length 301 measured
mean base quality 33.9 measured
adapter content pct 39.87 measured
duplication rate pct 96.21 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 41/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.4 measured ×1 62%
adapter content pct 39.87 measured ×0.5 0%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0