Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA438514

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This West Nile virus amplicon dataset on an Illumina MiSeq platform generated 47 million reads with 93.1% Q30 bases, capturing viral sequence variation for surveillance and epidemiological tracking. Researchers monitoring West Nile virus evolution, geographic distribution, or host adaptation will find amplicon-based genomic data suitable for phylogenetic and population-level analyses. The dataset demonstrates high-throughput multiplexed viral surveillance.

Data type / assay
amplicon
Organism
West Nile virus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
77 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 23701773664 reported
total reads 47296596 reported
n content pct 0.007 measured
pct q20 bases 96.1 measured
pct q30 bases 93.1 measured
gc content pct 52.2 measured
mean read length 250 measured
mean base quality 37.1 measured
adapter content pct 0.08 measured
duplication rate pct 97.82 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.1 measured ×1 100%
adapter content pct 0.08 measured ×0.5 100%
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0