PRJNA449130

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq X Ten bulk RNA-Seq of Cucumis sativus (cucumber) with 223 million short reads and 66.7 Gb at high quality (97.8% Q20, 93.9% Q30). Supports comprehensive transcriptome assembly and agronomic gene expression studies in this economically important vegetable crop.

Data type / assay

bulk-RNA-seq

Organism

Cucumis sativus

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

4 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 66691626116 reported

total reads 222899041 reported

n content pct 0.001 measured

pct q20 bases 97.8 measured

pct q30 bases 93.9 measured

gc content pct 50.5 measured

mean read length 149.4 measured

mean base quality 38.8 measured

adapter content pct 0 measured

duplication rate pct 63.59 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.9 measured ×1 100%

mean base quality 38.8 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 63.59 measured ×0.4 25%

QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0