Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA472003

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bulk RNA-seq dataset from Nymphaea alba (white water lily) on an Illumina HiSeq 3000 platform generated 170 million reads with exceptional 96.4% Q30 quality, enabling comprehensive aquatic plant transcriptome analysis. Researchers investigating water-lily development, pollination biology, or flowering-plant evolution will find gold-standard expression data for differential analysis and isoform discovery. The dataset supports de novo transcriptome assembly of this understudied plant lineage.

Data type / assay
bulk-RNA-seq
Organism
Nymphaea alba
Instrument
Illumina HiSeq 3000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 33096434307 reported
total reads 169547417 reported
n content pct 0 measured
pct q20 bases 99.3 measured
pct q30 bases 96.4 measured
gc content pct 47.7 measured
mean read length 98.1 measured
mean base quality 37.1 measured
adapter content pct 0 measured
duplication rate pct 59.98 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.4 measured ×1 100%
mean base quality 37.1 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 59.98 measured ×0.4 33%
QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0