Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA472212

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bulk RNA-seq dataset from Anas sp. (duck) on an Illumina HiSeq 2500 yielded 241 million reads with 93.2% Q30 bases, enabling transcriptome profiling of an avian organism. Researchers studying waterfowl immunology, migration physiology, or comparative vertebrate genomics will find high-quality expression data suitable for differential expression and pathway analysis. The 53.7% GC content is typical for avian genomes and supports reliable read alignment.

Data type / assay
bulk-RNA-seq
Organism
Anas sp.
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
11 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 48287303200 reported
total reads 241436516 reported
n content pct 0.3 measured
pct q20 bases 96.4 measured
pct q30 bases 93.2 measured
gc content pct 53.7 measured
mean read length 100 measured
mean base quality 36.1 measured
adapter content pct 3.96 measured
duplication rate pct 62.14 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.2 measured ×1 100%
mean base quality 36.1 measured ×0.6 100%
adapter content pct 3.96 measured ×0.4 89%
duplication rate pct 62.14 measured ×0.4 29%
QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0