Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA472855

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This plant metagenome amplicon dataset on an Illumina MiSeq platform contains 2.8 million reads with 87% Q30 bases, capturing rhizosphere or phyllosphere microbial communities. Researchers investigating plant-microbe interactions, root colonization, or plant-associated microbiota will find amplicon data for microbial taxonomy and compositional analysis. The modest read count is suitable for single-plant samples or focused environmental profiling.

Data type / assay
amplicon
Organism
plant metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
8 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1618444931 reported
total reads 2843181 reported
n content pct 0 measured
pct q20 bases 95.3 measured
pct q30 bases 87 measured
gc content pct 52.2 measured
mean read length 296.2 measured
mean base quality 34.8 measured
adapter content pct 0 measured
duplication rate pct 97.51 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87 measured ×1 85%
adapter content pct 0 measured ×0.5 100%
QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0