Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA475030

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

HiSeq 2500 whole-genome sequencing of Bacillus thuringiensis with 1.9 billion short reads covering ~490 Gb at moderate quality (88.2% Q20, 83% Q30). Supports genome assembly, variant calling, and comparative genomics in this soil bacterium used as biopesticide; note moderate Q30 may require post-processing for sensitive variant applications.

Data type / assay
WGS
Organism
Bacillus thuringiensis
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
60 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 490337657208 reported
total reads 1945784354 reported
n content pct 0.021 measured
pct q20 bases 88.2 measured
pct q30 bases 83 measured
gc content pct 34.4 measured
mean read length 126 measured
mean base quality 33.5 measured
adapter content pct 0.02 measured
duplication rate pct 4.64 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83 measured ×1 65%
duplication rate pct 4.64 measured ×0.5 100%
adapter content pct 0.02 measured ×0.4 100%
QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0