Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA476358

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This amplicon dataset of Anopheles gambiae (malaria mosquito) on an Illumina MiSeq platform generated 11 million reads with exceptional 98% Q30 quality, providing clean sequence data for mosquito genomics or microbiota studies. Researchers investigating mosquito-pathogen interactions, insecticide resistance, or vector competence will find high-fidelity amplicon data. The dataset demonstrates robust amplicon sequencing of this medically important disease vector.

Data type / assay
amplicon
Organism
Anopheles gambiae
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
8 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5457240016 reported
total reads 10915802 reported
n content pct 0 measured
pct q20 bases 98.8 measured
pct q30 bases 98 measured
gc content pct 43.5 measured
mean read length 250.8 measured
mean base quality 37.4 measured
adapter content pct 0 measured
duplication rate pct 99.68 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0