Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA477342

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Aeromonas hydrophila hybrid short- and long-read genome sequencing on MiSeq generates 10.2 billion bases (14.3 million reads) with low Q30 for long reads (27.1%), typical of nanopore-hybrid datasets. The long-read component enables resolution of repetitive regions and plasmids despite modest short-read Q30; useful for complete or circular genome assembly of this opportunistic pathogen.

Data type / assay
WGS
Organism
Aeromonas hydrophila
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
21 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 10257203065 reported
total reads 14374922 reported
n content pct 0 measured
pct q20 bases 47.6 measured
pct q30 bases 27.1 measured
gc content pct 31.8 measured
mean read length 5797.8 measured
mean base quality 21.3 measured
adapter content pct 0 measured
duplication rate pct 0.71 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 27.1 measured ×1 0%
duplication rate pct 0.71 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0