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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
96/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Gallus gallus
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
9 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
125385641700
reported
total reads
417952139
reported
n content pct
0
measured
pct q20 bases
97.6
measured
pct q30 bases
93.4
measured
gc content pct
55.7
measured
mean read length
150
measured
mean base quality
38.7
measured
adapter content pct
0
measured
duplication rate pct
41.01
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 96/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
93.4
measured
×1
100%
mean base quality
38.7
measured
×0.6
100%
adapter content pct
0
measured
×0.4
100%
duplication rate pct
41.01
measured
×0.4
76%
QC cost
27 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0