Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA483246

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This hybrid-read WGS dataset of Klebsiella pneumoniae on an Illumina HiSeq 2000 contains 1.9 million reads with very low short-read quality (0.5% Q30), reflecting a challenging hybrid experiment where long reads compensate for short-read limitations. Researchers assembling complex bacterial genomes or studying highly repetitive genomic regions will need specialized hybrid-assembly algorithms. The 55.8% GC content is typical for Enterobacteriaceae.

Data type / assay
WGS
Organism
Klebsiella pneumoniae
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
8 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4851742788 reported
total reads 1904224 reported
n content pct 0 measured
pct q20 bases 25.9 measured
pct q30 bases 0.5 measured
gc content pct 55.8 measured
mean read length 3948.3 measured
mean base quality 14.3 measured
adapter content pct 0.03 measured
duplication rate pct 1.25 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0.5 measured ×1 0%
duplication rate pct 1.25 measured ×0.5 100%
adapter content pct 0.03 measured ×0.4 100%
QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0